failed build with current mercurial sources
Ben Abbott
bpabbott at mac.com
Fri Mar 7 17:41:29 CST 2008
On Mar 7, 2008, at 11:27 AM, Jaroslav Hajek wrote:
>
> On Fri, Mar 7, 2008 at 1:58 PM, Ben Abbott <bpabbott at mac.com> wrote:
>> I tried to build the most recent mercurial sources a moment ago.
>>
>> "hg log" gives the following as the tip. So it appears I am current.
>>
>> changeset: 7651:2f3abc5ee6e8
>> branch: release-3-0-x
>> tag: tip
>> parent: 7648:49014b68f297
>> user: John W. Eaton <jwe at octave.org>
>> date: Fri Mar 07 06:25:19 2008 -0500
>> summary: set axes layer property to "top"
>>
>> When I tried to build, it failed during "make check"
>>
>> [snip]
>> make -f octMakefile check
>> make -C test check
>> ./build_sparse_tests.sh
>> ../run-octave --norc --silent --no-history ./fntests.m .
>>
>> Integrated test scripts:
>>
>> src/DLD-FUNCTIONS/bsxfun.cc ............................ PASS
>> 55/55
>> src/DLD-FUNCTIONS/cellfun.cc ........................... PASS
>> 31/31
>> src/DLD-FUNCTIONS/chol.cc .............................. PASS
>> 2/2
>> src/DLD-FUNCTIONS/conv2.cc ............................. PASS
>> 1/1
>> src/DLD-FUNCTIONS/dassl.cc ............................. PASS
>> 4/4
>> src/DLD-FUNCTIONS/dispatch.cc .......................... PASS
>> 13/13
>> src/DLD-FUNCTIONS/dmperm.cc ............................ PASS
>> 5/5
>> src/DLD-FUNCTIONS/fft.cc ............................... PASS
>> 13/13
>> src/DLD-FUNCTIONS/fsolve.cc ............................ PASS
>> 4/4
>> src/DLD-FUNCTIONS/lsode.cc ............................. PASS
>> 5/5
>> src/DLD-FUNCTIONS/luinc.cc ............................. PASS
>> 2/2
>> src/DLD-FUNCTIONS/matrix_type.cc ....................... PASS
>> 51/51
>> src/DLD-FUNCTIONS/qr.cc ................................panic:
>> Segmentation fault -- stopping myself...
>> make[2]: *** [check] Segmentation fault
>> make[1]: *** [check] Error 2
>> make: *** [check] Error 2
>>
>> Can some one confirm?
>>
>
> Can you please run "test qr verbose" to reveal which test gives the
> segfault?
> Also,please tell me your system configuration (in particular what C++
> and Fortran compilers you use).
There's a lot of info below. Everything you asked for is there ... and
more
octave:1> test qr verbose
>>>>> /Users/bpabbott/Development/mercurial/octave-3.0.0/src/DLD-
FUNCTIONS/qr.cc
***** testif HAVE_CXSPARSE
n = 20; d= 0.2;
a = sprandn(n,n,d)+speye(n,n);
r = qr(a);
assert(r'*r,a'*a,1e-10)
***** testif HAVE_CXSPARSE
n = 20; d= 0.2;
a = sprandn(n,n,d)+speye(n,n);
q = symamd(a);
a = a(q,q);
r = qr(a);
assert(r'*r,a'*a,1e-10)
***** testif HAVE_CXSPARSE
n = 20; d= 0.2;
a = sprandn(n,n,d)+speye(n,n);
[c,r] = qr(a,ones(n,1));
assert (r\c,full(a)\ones(n,1),10e-10)
***** testif HAVE_CXSPARSE
n = 20; d= 0.2;
a = sprandn(n,n,d)+speye(n,n);
b = randn(n,2);
[c,r] = qr(a,b);
assert (r\c,full(a)\b,10e-10)
***** #testif HAVE_CXSPARSE
n = 20; d= 0.2;
a = sprandn(n,n+1,d)+speye(n,n+1);
b = randn(n,2);
[c,r] = qr(a,b);
assert (r\c,full(a)\b,10e-10)
***** testif HAVE_CXSPARSE
n = 20; d= 0.2;
a = 1i*sprandn(n,n,d)+speye(n,n);
r = qr(a);
assert(r'*r,a'*a,1e-10)
***** testif HAVE_CXSPARSE
n = 20; d= 0.2;
a = 1i*sprandn(n,n,d)+speye(n,n);
q = symamd(a);
a = a(q,q);
r = qr(a);
assert(r'*r,a'*a,1e-10)
***** testif HAVE_CXSPARSE
n = 20; d= 0.2;
a = 1i*sprandn(n,n,d)+speye(n,n);
[c,r] = qr(a,ones(n,1));
assert (r\c,full(a)\ones(n,1),10e-10)
***** testif HAVE_CXSPARSE
n = 20; d= 0.2;
a = 1i*sprandn(n,n,d)+speye(n,n);
b = randn(n,2);
[c,r] = qr(a,b);
assert (r\c,full(a)\b,10e-10)
***** #testif HAVE_CXSPARSE
n = 20; d= 0.2;
a = 1i*sprandn(n,n+1,d)+speye(n,n+1);
b = randn(n,2);
[c,r] = qr(a,b);
assert (r\c,full(a)\b,10e-10)
***** error qr(sprandn(10,10,0.2),ones(10,1));
***** test
A = [0.091364 0.613038 0.999083;
0.594638 0.425302 0.603537;
0.383594 0.291238 0.085574;
0.265712 0.268003 0.238409;
0.669966 0.743851 0.445057 ];
u = [0.85082;
0.76426;
0.42883;
0.53010;
0.80683 ];
v = [0.98810;
0.24295;
0.43167 ];
[Q,R] = qr(A);
[Q,R] = qrupdate(Q,R,u,v);
assert(norm(vec(Q'*Q - eye(5)),Inf) < 1e1*eps)
assert(norm(vec(triu(R)-R),Inf) == 0)
assert(norm(vec(Q*R - A - u*v'),Inf) < norm(A)*1e1*eps)
***** test
A = [0.620405 + 0.956953i 0.480013 + 0.048806i 0.402627 + 0.338171i;
0.589077 + 0.658457i 0.013205 + 0.279323i 0.229284 + 0.721929i;
0.092758 + 0.345687i 0.928679 + 0.241052i 0.764536 + 0.832406i;
0.912098 + 0.721024i 0.049018 + 0.269452i 0.730029 + 0.796517i;
0.112849 + 0.603871i 0.486352 + 0.142337i 0.355646 +
0.151496i ];
u = [0.20351 + 0.05401i;
0.13141 + 0.43708i;
0.29808 + 0.08789i;
0.69821 + 0.38844i;
0.74871 + 0.25821i ];
v = [0.85839 + 0.29468i;
0.20820 + 0.93090i;
0.86184 + 0.34689i ];
[Q,R] = qr(A);
[Q,R] = qrupdate(Q,R,u,v);
assert(norm(vec(Q'*Q - eye(5)),Inf) < 1e1*eps)
assert(norm(vec(triu(R)-R),Inf) == 0)
assert(norm(vec(Q*R - A - u*v'),Inf) < norm(A)*1e1*eps)
panic: Segmentation fault -- stopping myself...
Segmentation fault
----------
Configuration (please do not edit this section):
-----------------------------------------------
uname output: Darwin bens-macbook.local 9.2.0 Darwin Kernel
Version 9.2.0: Tue Feb 5 16:13:22 PST 2008; root:xnu-1228.3.13~1/
RELEASE_I386 i386
configure opts: '--prefix=/sw' 'FLIBS=/sw/lib/gcc4.2/lib/
libgfortran.dylib' 'F77=/sw/bin/gfortran' '--infodir=/sw/share/info'
'--mandir=/sw/share/man' '--libexecdir=/sw/lib' '-enable-shared' '-
enable-dl' '--disable-static' '--without-mpi' '--with-hdf5' '--with-
fftw' '--with-lapack=-Wl,-framework,Accelerate,-dylib_file,/System/
Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/
vecLib.framework/Versions/A/libLAPACK.dylib:/System/Library/Frameworks/
Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/
libLAPACK.dylib' '--with-blas=-Wl,-framework,Accelerate,-dylib_file,/
System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/
vecLib.framework/Versions/A/libBLAS.dylib:/System/Library/Frameworks/
Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/
libBLAS.dylib' 'CFLAGS=-O3' 'LDFLAGS=-L/sw/lib' 'CPPFLAGS=-I/sw/
include' 'CXXFLAGS=-O3' 'FFLAGS=-O3'
Fortran compiler: /sw/bin/gfortran
FFLAGS: -O3 -mieee-fp
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CPPFLAGS: -I/sw/include -I/sw/include
INCFLAGS: -I. -I. -I./liboctave -I./src -I./libcruft/misc
C compiler: gcc, version 4.0.1 (Apple Inc. build 5465)
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CPICFLAG: -fPIC
C++ compiler: g++, version 4.0.1
CXXFLAGS: -O3
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LIBFLAGS: -L.
RLD_FLAG:
BLAS_LIBS: -Wl,-framework,Accelerate,-dylib_file,/System/
Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/
vecLib.framework/Versions/A/libLAPACK.dylib:/System/Library/Frameworks/
Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/
libLAPACK.dylib -Wl,-framework,Accelerate,-dylib_file,/System/Library/
Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/
Versions/A/libBLAS.dylib:/System/Library/Frameworks/
Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/
libBLAS.dylib
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User-preferences (please do not edit this section):
--------------------------------------------------
EDITOR = mate
EXEC_PATH = /sw/lib/octave/3.0.0+/site/exec/i386-apple-darwin9.2.0:/
sw/lib/octave/api-v32+/site/exec/i386-apple-darwin9.2.0:/sw/lib/octave/
site/exec/i386-apple-darwin9.2.0:/sw/lib/octave/3.0.0+/exec/i386-apple-
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usr/local/bin:/usr/X11/bin:/usr/X11R6/bin
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scripts/image:/sw/share/octave/3.0.0+/imagelib
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