Unable to open scipy.io.savemat mat file

John W. Eaton jwe at octave.org
Tue Jul 7 17:02:30 CDT 2009


On  7-Jul-2009, Dickon Humphrey wrote:

| Bug report for Octave 3.2.0 configured for i686-pc-mingw32
| 
| Description:
| -----------
| 
| Octave will not open a mat file saved using scipy.io.savemat. I believe 
| the version of scipy used is 0.7.0, which has recently been reworked. 
| The release notes for scipy 0.7.0 state: 
| 
| The Matlab (TM) file readers/writers have a number of improvements:
| 
| * default version 5
| * v5 writers for structures, cell arrays, and objects
| * v5 readers/writers for function handles and 64-bit integers
| * new struct_as_record keyword argument to ``loadmat``, which loads
|   struct arrays in matlab as record arrays in numpy
| * string arrays have ``dtype='U...'`` instead of ``dtype=object``
| 
| The error I get when opening the attached file is:
| 
| > load D66_TH_Dcr2_POLG-RNAi-A2_small.mat
| error: unable to resize object to fewer than 2 dimensions
| 
| The code that produces the mat file is the 'WriteMAT' function in the 
| attached python file from an application called Ctrax 
| (http://developer.berlios.de/projects/ctrax/ ).
| 
| Repeat-By:
| ---------
| 
| > load <file exported by scipy.io.savemat>.mat

Instead of sending a scipy script, how about sending a (small) .mat
file created by scipy that shows the problem?

jwe


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